# An Overview Of Infrared Spectroscopy Biology Essay

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Infrared spectroscopy is the most powerful technique use in the analytical laboratory. Infrared spectroscopy is associated with the infrared region. There are number of compounds (organic and inorganic), which absorbed various frequency of electromagnetic radiation.

Infrared region divided into three types; near- IR, mid- IR, far- IR. In terms of the wave length near-IR region extends from 1400cm-1-4000cm-1, mid-IR from 4000cm-1-400cm-1 and far -IR from 400-10cm-1 .

Main function of the infrared spectroscopy is to identify all the type of the organic and inorganic compounds. Functional group and molecular composition of the compound also find out by the infrared spectroscopy. It's also help in quantitative determination of compound mixture.

In infrared spectroscopy the molecule absorbed specific frequencies that are the characteristic of their structure. This absorption is resonant frequencies. i.e the frequency of the absorbed radiation matches the frequency of the bond or group that vibrates. In order to absorb IR radiation, a molecule must undergo a net change in dipole moment as a consequence of its vibration.

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IR spectrum generally presented in the either wavelength or wavenumbers. Wavelength is inversely proportional to the frequency and wavenumber s is directly proportional to the frequency as well as the energy of the IR absorption.

Infrared spectrum is a graph of wavelength vs. absorbance (A), but for IR region as wavenumber (in cm-1) on X-axis and percent transmittance (%T) on Y-axis. Transmittance is the ratio of the radiant power (I) transmitted by a sample to the radiant power incident on the sample (I0). Absorbance (A) is the logarithm to the base 10 of the reciprocal of the transmittance (T).

A = log10 (1/T ) = -log10T = -log10I /I0

The transmittance spectra provide better contrast between intensities of strong and weak bands because transmittance ranges from 0 to 100% T whereas absorbance ranges from infinity to zero. The analyst should be aware that the same sample will give quite different profiles for the IR spectrum, which is linear in wavenumber, and the IR plot, which is linear in wavelength. It will appear as if some IR bands have been contracted or expanded.

## Molecular vibrations

The positions of atoms in molecules are not fixed; they are subject to a number of different vibrations. There are two types of vibration;

Stretching: Change in inter-atomic distance along bond axis; there are two type of stretching;

Asymmetric stretching

Symmetric stretching

Bending: Change in angle between two bonds. There are four types of bend:

Rocking

Scissoring

Wagging

Twisting

In the organic molecule each bond having its characteristics stretching and bending frequency and capable of absorbing light of that frequency. Stretching absorption of a bond appears at higher frequencies in the infrared spectrum than the bending absorptions of the same bond.

The position of absorption bands depends on the relative masses of the atoms, the force constants of the bonds and the geometry of the atom.

The HOOKE' S law, which gives frequency with bond strength and atomic masses, since

For a diatomic molecule A-B, the wavenumber (in cm-1) of the absorption ;

There are two useful regions in the IR spectrum. The group frequency region encompasses 3600 to 1200 cm-1 region, where the identical functional groups fingerprint region from 1200 to 700 cm-1 and it reflects the absorptions from the skeletal structure of the molecule. Small differences in the structure result in significant changes in fingerprint region so it leads to great evidence for the identity of the compounds yielding the spectra. Only stereoisomers absorb exactly in the same way in this region.

There are several instrument used to determine the absorption for a compound is called an infrared spectrometer. There are two types of infrared spectrometer;

Dispersive infrared spectrometer

Fourier transfer infrared spectrometer (FT-IR)

Both the instrument measures the spectra of the compounds in the range of 4000 to 400cm-1.

Now a day, number of industries and laboratories worked on the FT-IR. Because dispersive infrared spectrometer has many limitation, like it suffer from sensitivity, speed and wavelength accuracy. FT-IR gives infrared spectrum within a second. The main advantage of use of FT-IR is that FT-IR does not have the slits. This is present in the dispersive infrared. Because the some of the light is pass through the slit, so there is loss of light.

## Fourier transfer infrared spectrometer (FT-IR)

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The main components of the FT-IR are radiation source, interferometer and detector.

Source :-

The sources are rod in shape. They are heated by electronically around 1800 oc. The sources rods are made up from the Nernst glower (Zr,Th, Ce, Er, etc), Globar (silicon carbide) an other ceramic materials.

The light comes from these sources are passed through the interferometer. The interferometer is a design in which two optical paths gets divided and then recombines them and produce wave type pattern, which contain all the frequencies. Those form the infrared spectrum.

Interferometer

The interferometer used in the FT-IR is called as the Michelson interferometer.

Michelson interferometer consist three basic components; moving mirror, fixed mirror and Beam splitter.

The beam splitter is a semi reflecting device and is often made by depositing a thin film of germanium onto a flat KBr substrate. The light comes from the sources and its strikes on beam splitter. Which is designed to split the beam (A) exactly in half.

The beam (B) is transmitted towards fixed mirror and its get reflected back towards the beam splitter, other beam (C) is transmitted towards moving mirror and it's also get reflected back towards the beam splitter. Both the beam is recombine at the beam splitter and high intensity radiation will reach the detector.

Fig:- Michelson interferometer

Michelson interferometer an optical path difference is introduced between the two beams by translating the moving mirror away from the beam splitter. A general property of (optical) waves is that their amplitudes are additive. When the beams that have reflected off the fixed and moving mirrors recombine at the beam splitter are in phase, an intense beam leaves the interferometer as a result of constructive interference. When the fixed and moving mirrors beams are recombined at the beam splitter and the waves are completely out of phase, a low intensity beam leaves the interferometer as a result of destructive interference. The sample is placed between the source and the beam splitter.

Detectors

In the FT-IR to get the good sensitivity and speed in recording the spectrum must be matched in the speed and photometric accuracy of the detectors; this is achieved by thermal detectors based on pyroelectric materials or on solid state semiconductor devices based on photovoltaic or photoconductive principles.

The main advantages of an FT-IR instrument is that it collect dozens of interferogram of the sample and accumulate them in the memory of a computer. To obtain a spectrum of a compound, the chemist first obtain an interferogram of the background which consists of the infrared-active atmospheric gases, carbon dioxide and water vapour (oxygen and nitrogen are not infrared active). The interferogram is subjected into a Fourier transform, which yield the spectrum of the background. Then the chemist places the compound (sample) and obtains the spectrum resulting from the Fourier transform of the interferogram. This spectrum contains absorption bans for both the compound and background. The computer software automatically subtracts the spectrum of the background from the sample spectrum, and the obtain spectrum of the compound being analyzed.

An infrared spectrometer determines the position and relatives sizes of all the absorptions, or peaks, in the infrared region and plots them on a piece of paper. The spectrum gives at least two strongly absorbing peaks at about 3000 and 1715 cm-1 for the C-H and C=O stretching frequencies respectively. The given table show the frequency of the different functional group to identify the peaks of the band, which obtain in the spectrum.

## Frequency

1

C-H

Alkanes (stretch)

3000-2850

-CH3(bend)

1450 and 1375

-CH2-

1465

Alkenes (stretch)

( Out of plane bend)

3100-3000

1000-650

Aromatics (stretch)

( Out of plane bend)

3150-3050

900-600

Alkyne (stretch)

ca.3300

Aldehyde

2900-2800

2800-2700

2

C-C

Alkane

Not interpretatively useful

3

C=C

Alkene

1680-1475

Aromatic

1600 and 1475

4

C=

alkyne

2250-2210

5

C=O

Aldehyde

1740-1720

Ketone

1725-1705

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Carboxylic acid

1725-1700

Ester

1750-1730

Amide

1680-1630

Anhydride

1810 and 1760

Acid chloride

1800

6

C-O

Alcohols, ethers, esters, carboxylic acid , anhydrides

1300-1000

7

O-H

Alcohols, phenols

Free

H-bonded

Carboxylic acid

3650-3600

3400-3200

3400-2400

8

N-H

Primary and secondary amines and amides

(stretch)

(bend)

3500-3100

1640-1550

9

C-N

Amines

1350-1000

10

C=N

Imines and oximes

1690-1640

11

c

Nitriles

2260-2240

12

X=C=Y

Allenes, ketenes, isocyanates, isothiocyanates

2270-1940

13

N=O

Nitro(R-NO2)

1550 and 1350

14

S-H

Mercaptans

2550

15

S=O

Sulfoxides

1050

Sulfones, sulfonyl chlorides, sulphates, sulfonamides

1375-1300 and 1350=1140

16

C-X

Fluoride

1400-1000

Chloride

785-540

Bromide, iodide

&lt;667