Experiment for Plant Recognition

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29th Aug 2017 Computer Science Reference this


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In classical sparse representation based classification (SRC) and weighted SRC (WSRC) algorithms, the test samples are sparely represented by all training samples. They emphasize the sparsity of the coding coefficients but without considering the local structure of the input data. Although the more training samples, the better the sparse representation, it is time consuming to find a global sparse representation for the test sample on the large-scale database. To overcome the shortcoming, aiming at the difficult problem of plant leaf recognition on the large-scale database, a two-stage local similarity based classification learning (LSCL) method is proposed by combining local mean-based classification (LMC) method and local WSRC (LWSRC). In the first stage, LMC is applied to coarsely classifying the test sample. k nearest neighbors of the test sample, as a neighbor subset, is selected from each training class, then the local geometric center of each class is calculated. S candidate neighbor subsets of the test sample are determined with the first S smallest distances between the test sample and each local geometric center. In the second stage, LWSRC is proposed to approximately represent the test sample through a linear weighted sum of all kÃ-S samples of the S candidate neighbor subsets. The rationale of the proposed method is as follows: (1) the first stage aims to eliminate the training samples that are ”far” from the test sample and assume that these samples have no effects on the ultimate classification decision, then select the candidate neighbor subsets of the test sample. Thus the classification problem becomes simple with fewer subsets; (2) the second stage pays more attention to those training samples of the candidate neighbor subsets in weighted representing the test sample. This is helpful to accurately represent the test sample. Experimental results on the leaf image database demonstrate that the proposed method not only has a high accuracy and low time cost, but also can be clearly interpreted.

Keywords: Local similarity-based-classification learning (LSCL); Local mean-based classification method (LMC); Weighted sparse representation based classification (WSRC); Local WSRC (LWSRC); Two-stage LSCL.

1. Introduction

Similarity-based-classification learning (SCL) methods make use of the pair-wise similarities or dissimilarities between a test sample and each training sample to design the classification problem. K-nearest neighbor (K-NN) is a non-parametric, simple, attractive, relatively mature pattern SCL method, and is easy to be quickly achieved [1,2]. It has been widely applied to many applications, including computer vision, pattern recognition and machine learning [3,4]. Its basic processes are: calculating the distance (as dissimilarity or similarity) between the test sample y and each training sample, selecting k samples with k minimum distances as the nearest k neighbors of y, finally determining the category of y that most of the nearest k neighbors belong to. In weighted K-NN, it is useful to assign weight to the contributions of the neighbors, so that the nearer neighbors contribute more to the classification method than the more dissimilarity ones. One of the disadvantages of K-NN is that, when the distribution of the training set is uneven, K-NN may cause misjudgment, because K-NN only cares the order of the first k nearest neighbor samples but does not consider the sample density. Moreover, the performance of K-NN is seriously influenced by the existing outliers and noise samples. To overcome these problems, a number of local SCL (LSCL) methods have been proposed recently. The local mean-based nonparametric classifier (LMC) is said to be an improved K-NN, which can resist the noise influences and classify the unbalanced data [5,6]. Its main idea is to calculate the local mean-based vector of each class as the nearest k neighbor of the test sample, and the test sample can be classified into the category that the nearest local mean-based vector belongs to. One disadvantage of LMC is that it cannot well represent the similarity between multidimensional vectors. To improve the performance of LMC, Mitani et al. [5] proposed a reliable local mean-based K-NN algorithm (LMKNN), which employs the local mean vector of each class to classify the test sample. LMKNN has been already successfully applied to the group-based classification, discriminant analysis and distance metric learning. Zhang et al. [6] further improved the performance of LMC by utilizing the cosine distance instead of Euclidean distance to select the k nearest neighbors. It is proved to be better suitable for the classification of multidimensional data.

Above SCL, LMC and LSCL algorithms are often not effective when the data patterns of different classes overlap in the regions in feature space. Recently, sparse representation based classification (SRC) [8], a SCL modified manner, has attracted much attention in various areas. It can achieve better classification performance than other typical clustering and classification methods such as SCL, LSCL, linear discriminant analysis (LDA) and principal component analysis (PCA) [7] in some cases. In SRC [9], a test image is encoded over the original training set with sparse constraint imposed on the encoding vector. The training set acts as a dictionary to linearly represent the test samples. SRC emphasizes the sparsity of the coding coefficients but without considering the local structure of the input data [10,11]. However, the local structure of the data is proven to be important for the classification tasks. To make use of the local structure of the data, some weighted SRC (WSRC) and local SCR (LSRC) algorithms have been proposed. Guo et al. [12] proposed a similarity WSRC algorithm, in which, the similarity matrix between the test samples and the training samples can be constructed by various distance or similarity measurements. Lu et al. [13] proposed a WSRC algorithm to represent the test sample by exploiting the weighted training samples based on l1-norm. Li et al. [14] proposed a LSRC algorithm to perform the sparse decomposition in local neighborhood. In LSRC, instead of solving the l1-norm constrained least square problem for all of training samples, they solved a similar problem in the local neighborhood of each test sample.

SRC, WSRC, similarity WSRC and LSRChave something in common, such as, the individual sparsity and local similarity between the test sample and the training samples are considered to ensure that the neighbor coding vectors are similar to each other if they have strong correlation, and the weighted matrix is constructed by incorporating the similarity information, the similarity weighted l1-norm minimization problem is constructed and solved, and the obtained coding coefficients tend to be local and robust.

Leaf based plant species recognition is one of the most important branches in pattern recognition and artificial intelligence [15-18]. It is useful for agricultural producers, botanists, industrialists, food engineers and physicians, but it is a NP-hard problem and a challenging research [19-21], because plant leaves are quite irregular, it is difficult to accurately describe their shapes compared with the industrial work pieces, and some between-species leaves are different from each other, as shown in Fig1.A and B, while within-species leaves are similar to each other, as shown in Fig.1C [22].


test sample training 1 training 2 training 3 training 4 training 5 training 6 training 7

(A) Four different species leaves (B) Four different species leaves

(C) Ten same species leaves

Fig.1 plant leaf examples

SRC can be applied to leaf based plant species recognition [23,24]. In theory, in SRC and modified SRC, it is well to sparsely represent the test sample by too many training samples. In practice, however, it is time consuming to find a global sparse representation on the large-scale leaf image database, because leaf images are quite complex than face images. To overcome this problem, in the paper, motivated by the recent progress and success in LMC [6], modified SRC [12-14], two-stage SR [25] and SR based coarse-to-fine face recognition [26], by creatively integrating LMC and WSRC into the leaf classification, a novel plant recognition method is proposed and verified on the large-scale dataset. Different from the classical plant classification methods and the modified SRC algorithms, in the proposed method, the plant species recognition is implemented through a coarse recognition process and a fine recognition process.

The major contributions of the proposed method are (1) a two-stage plant species recognition method, for the first time, is proposed; (2) a local WSRC algorithm is proposed to sparsely represent the test sample; (3) the experimental results indicate that the proposed method is very competitive in plant species recognition on large-scale database.

The remainder of this paper is arranged as follows: in Section 2, we briefly review LMC, SRC and WSRC. In Section 3, we describe the proposed method and provide some rationale and interpretation. Section 4 presents experimental results. Section 5 offers conclusion and future work.

2. Related works

In this section, some related works are introduced. Suppose n training samples,, from different classes {X1, X2,…,XC}. is the sample number of the ith class, then.

2.1 LMC

Local mean-based nonparametric classification (LMC) is an improved K-NN method [6]. It uses Euclidean distance or cosine distance to select nearest neighbors and measure the similarity between the test sample and its neighbors. In general, the cosine distance is more suitable to describe the similarity of the multi-dimensional data.

LMC is described as follows, for each test sample y,

Step 1: Select k nearest neighbors of y from the jth class, as a neighbor subset represented by;

Step 2: Calculate the local mean-based vector for each classby,


Step 3: Calculate the distance between y and.

Step 4: if Euclidean distance metric is adopted; while if cosine distance metric is adopted.

2.2 SRC

SRC relies on a distance metric to penalize the dissimilar samples and award the similar samples. Its main idea is to sparsely represent and classify the test sample by a linear combination of all the training samples. The test sample is assigned into the class that produces the minimum residue.

SRC is described as follows,

Input: n training samples, a test sample.

Output: the class label of y.

Step 1: Construct the dictionary matrixby n training samples. Each column of A is a training sample called basis vector or atom. Normalize each column of A to unit l2-norm.

A is required to be unit l2-norm (or bounded norm) in order to avoid the trivial solutions that are due to the ambiguity of the linear reconstruction.

Step 2: Construct and solve an l1-norm minimization problem,


where x is called as spare representation coefficients of y.

Eq. (2) can be usually approximate by an l1-norm minimization problem,


whereis the threshold of the residue.

Eq.(3) can be generalized as a constrained least square problem,


where λ>0 is a scalar regularization parameter which balances the tradeoff between the sparsity of the solution and the reconstruction error.

Eq.(4) is a constrained LASSO problem, its detail solution is found in Ref. [27].

Step 3: Compute residue, whereis the characteristic function that selects the coefficients associated with the ith class;

Step 4: the class label of, y, is identified as.

2.3 WSRC

WSRC integrates both sparsity and locality structure of the data to further improve the classification performance of SRC. It aims to impose larger weight to the training samples that are ‘farer’ from the test sample. Different from SRC, WSRC solves a weighted l1-norm minimization problem,


where W is a diagonal weighted matrix, and its diagonal elements are.

Eq.(5) makes sure that the coding coefficients of WSRC tend to be not only sparse but also local in linear representation [13], which can represent the test sample more robustly.

2.4 LSRC

Though a lot of instances have been reported that WSRC performs better than SRC in various classification problems, WSRC forms the dictionary by using all the training samples, thus the size of the generated dictionary may be large, which will make adverse effect to solving the l1-norm minimization problem. To overcome this drawback, a local sparse representation based classification (LSRC) is proposed to perform sparse decomposition in a local manner. In LSRC, K-NN criterion is exploited to find the nearest k neighbors for the test samples, and the selected samples are utilized to construct the over-complete dictionary. Different from SRC, LSRC solves a weighted l1 minimization problem,


wherestands for data matrix which consists of the k nearest neighbors of y.

Compared with the original SRC and WSRC, although the computational cost of LSRC will be saved remarkably when, LSRC does not assign different weight to the different training samples.

3. Two-stage LSCL

From the above analysis, it is found that each of LMC, WSRC and LSRC has its advantages and disadvantages. To overcome the difficult problem of plant recognition on the large-scale leaf image database, a two-stage LSCL leaf recognition method is proposed in the section. It is a sparse decomposition problem in a local manner to obtain an approximate solution. Compared with WSRC and LSRC, LSCL solves a weighted l1-norm constrain least square problem in the candidate local neighborhoods of each test sample, instead of solving the same problem for all the training samples. Suppose there are a test sampleand n training samples from C classes, andis the sample number of ith class,is jth sample of the ith class. Each sample is assumed to be a one-dimensional column vector. The proposed method is described in detail as follows.

3.1 First stage of LSCL

  1. Calculate the Euclidean distancebetween y and, and select k nearest neighbors of y fromwith the first k smallest distances, the selected neighbor subset noted as, .
  2. Calculate the average of,


  1. Calculate the Euclidean distancebetween y and.
  2. From C neighbor subsets, selectneighbor subsets with the firstsmallest distancesas the candidate subsets for the test sample, in simple terms, denoted as.

The training samples fromare reserved as the candidate training samples for the test sample, and the other training samples are eliminated from the training set.

3.2 Second step of LSCL

From the first stage, it is noted that there aretraining samples from all the candidate subsets. For simplify, we just as well express the jth training sample ofis. The second stage first represents the test sample as a linear combination of all the training samples of, and then exploits this linear combination to classify the test sample.

From the first stage, we have obtained the Euclidean distancebetween y and each candidate sample. By, a new local WSRC is proposed to solve the same weighted l1-norm minimization problem as Eq.(5),


where is the dictionary constructed bytraining samples of,is the weighted diagonal matrix, is the Euclidean distance between y and.

In Eq.(8), the weighted matrix is a locality adaptor to penalize the distance between y and. In the above SRC, WSRC, LSRC and LSCL, the l1−norm constraint least square minimization problem is solved by the approach proposed in [28], which is a specialized interior-point method for solving the large scale problem. The solution of Eq.(8) can be expressed as


From Eq.(9), is expressed as the sparse representation of the test sample. In representing the test sample, the sum of the contribution of the ith candidate neighbor subset is calculated by


whereis the jth sparse coefficient corresponding to the ith candidate nearest neighbor subset.

Then we calculate the residue of the ith candidate neighbor subset corresponding to test sample y,


In Eq.(11), for the ith class (), a smalleraverages the greater contribution to representing y. Thus, y is finally classified into the class that produces the smallest residue.

3.3 Summary of two-stage LSCL

From the above analysis, the main steps of the proposed method are summarized as follows.

Suppose n training samples from Cdifferent classes, a test sample y, the number k of the nearest neighbors of y, the number S of the candidate neighbor subsets.

Step 1. Compute the Euclidean distance between the test sample y and every training sample, respectively.

Step 2. Through K-NN rules, find k nearest neighbors from each training class as the neighbor subset for y, calculate the neighbor average of the neighbor subset of each class, and calculate the distance between y and the neighbor average.

Step 3. Determine S neighbor subsets with the first S smallest distances, as the candidate neighbor subsets for y.

Step 4. Construct the dictionary by all training samples of the S candidate neighbor subsets and then construct the weighted l1-norm minimization optimization problem as Eq.(8).

Step 5. Solve Eq.(8) and obtain the sparse coefficients.

Step 6. For each candidate neighbor subset, compute the residue between yand its estimationby Eq.(11).

Step 7. Identify the class labelthat has the minimum ultimate residue and classify y into this class.

3.4 Rationale and interpretation of LSCL

In practical, some between-species leaves are very different from the other leaves, as shown in Fig.1A. They can be easily classified by the Euclidean distances between the leaf digital image matrices. However, some between-species leaves are very similar to each other, as shown in Fig.1B. They cannot be easily classified by some simple classification methods. In Figs.1A and B, suppose the first leaf is the test sample, while other seven leaves are training samples. It is difficult to identify the label of the test leaf by the simple classification method, because the test leaf is very similar to Nos. 4,5,6 and 7 in Fig.1B. However, it is sure that the test sample is not Nos.1, 2 and 3. So, we can naturally firstly exclude these three leaves. This exclusion method example is the purpose of the first stage of LSCL. From Fig.1C, it is found that there is large difference between the leaves of the same species. Therefore, in plant recognition, an optimal scheme is to select some training samples that are relatively similar to the test sample as the candidate training samples, such as Nos. 2 and 9 in Fig.1C are similar to the test sample in Fig.1C, instead of considering all training samples. The average neighbor distance is used to coarsely recognize the test sample. The average neighbor distance as dissimilarity is more effective and robust than the original distance between the test and each training leaf, especially in the case of existing noise and outliers.

From the above analysis, in the first stage of LSCL, it is reasonable to assume that the leaf close to the test sample has great effect, on the contrary, if a leaf is far enough from the test sample it will have little effect and even have side-effect on the classification decision of the test sample. These leaves should be discarded firstly, and then the later plant recognition task will be clear and simple. In the same way, we can use the similarity between the test sample and the average of its nearest neighbors to select some neighbor subsets as the candidate training subsets of the test sample. If we do so, we can eliminate the side-effect on the classification decision of the neighbor subset that is far from the test sample. Usually, for the classification problem, the more the classes, the lower the classification accuracy, so the first stage is very useful.

In the second stage of LSCL, there are S nearest neighbor subsets as candidate class labels of the test sample, thus it is indeed faced with a problem simpler than the original classification problem, becauseand, i.e., few training samples are reserved to match the test sample. Thus, the computational cost is mostly reduced and the recognition rate will be improved greatly. We analyze the computational cost of LSCL in theory as follows.

There are n samples from C classes, and every sample is an mÃ-1 column vector, the first stage need to calculate the Euclidean distance, select k nearest neighbors from each class, and calculate the average of the k nearest neighbors, then the computational cost is about. In second stage, there aretraining samples to construct the dictionary A, the cost ofis, the cost ofis, and the cost ofis. The second stage has computational cost of+. The computational cost of LSCL is ++in total. The computational cost of the classical SRC algorithm is[8,9]. Compared with SRC, it is found that the computational cost of LSCL will be saved remarkably when.

4. Experiments and result analysis

In this section, the proposed method is validated on a plant species leaf database and compared with the state-of-the-art methods.

4.1 Leaf image data and experiment preparation

To validate the proposed method, we apply it to the leaf classification task using the ICL dataset. All leaf images of the dataset were collected at the Botanical Garden of Hefei, Anhui Province of China by Intelligent Computing Laboratory (ICL), Chinese Academy of Sciences. The ICL dataset contains 6000 plant leaf images from 200 species, in which each class has 30 leaf images. Some examples are shown in Fig.2. In the database, some leaves could be distinguished easily, such as the first 6 leaves in Fig.2A, while some leaves could be distinguished difficultly, such as the last 6 leaves in Fig.2A. We verify the proposed method by two situations, (1) two-fold cross validation, i.e., 15 leaf images of each class are randomly selected for training, and the rest 15 samples are used for testing; (2) leave-one-out cross validation, i.e., one of each class are randomly selected for testing and the rest 29 leaf images per class are used for training.

(A) Original leaf images

(B) Gray-scale images

(C) Binary texture images

Fig.2 Samples of different species from ICL database

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